# panorama package

## Subpackages

```{toctree}
:maxdepth: 4

panorama.alignment
panorama.annotate
panorama.compare
panorama.format
panorama.info
panorama.systems
panorama.utility
panorama.workflow
```

## Submodules

## panorama.geneFamily module

```{eval-rst}
.. automodule:: panorama.geneFamily
   :members:
   :undoc-members:
   :show-inheritance:
   :exclude-members: GeneFamily, Akin
```

```{eval-rst}
.. autosummary::
   :toctree: generated
   :template: summary.rst
   :nosignatures:

   GeneFamily
   Akin
```
## panorama.main module

```{eval-rst}
.. automodule:: panorama.main
   :members:
   :undoc-members:
   :show-inheritance:
```

## panorama.pangenomes module

```{eval-rst}
.. automodule:: panorama.pangenomes
   :members:
   :undoc-members:
   :show-inheritance:
   :exclude-members: Pangenome, Pangenomes
```

```{eval-rst}
.. autosummary::
   :toctree: generated
   :template: summary.rst
   :nosignatures:

   Pangenome
   Pangenomes
```
## panorama.region module

```{eval-rst}
.. automodule:: panorama.region
   :members:
   :undoc-members:
   :show-inheritance:
   :exclude-members: Region, Spot, ConservedSpots, Module, GeneContext
```

```{eval-rst}
.. autosummary::
   :toctree: generated
   :template: summary.rst
   :nosignatures:

   Region
   Spot
   ConservedSpots
   Module
   GeneContext
```
## panorama.utils module

```{eval-rst}
.. automodule:: panorama.utils
   :members:
   :undoc-members:
   :show-inheritance:
   :exclude-members: RawTextArgumentDefaultsHelpFormatter
```

```{eval-rst}
.. autosummary::
   :toctree: generated
   :template: summary.rst
   :nosignatures:

   RawTextArgumentDefaultsHelpFormatter
```