---
myst:
  html_meta:
    "description lang=en": |
      Documentation for users who wish to use PANORAMA
---

# User Documentation

```{toctree}
:caption: 'Get Started:'
:maxdepth: 2

install
quick_usage
issues
```

```{toctree}
:caption: 'Biological system Prediction:'
:maxdepth: 2

annotation
detection
write_systems
```

```{toctree}
:caption: 'Pangenomes comparison:'
:maxdepth: 2

compare_spots
compare_systems
```

```{toctree}
:caption: 'PANORAMA utilities:'
:maxdepth: 2

info
align
clustering
```