ClusteringConfig

class panorama.alignment.cluster.ClusteringConfig(CLUSTER_COLUMN_NAMES=<factory>, DEFAULT_THREADS=1, DEFAULT_IDENTITY=0.5, DEFAULT_COVERAGE=0.8, DEFAULT_COV_MODE=0, DEFAULT_EVAL=0.001, DEFAULT_MMSEQS2_OPTIONS=<factory>, CLUSTERING_OUTPUT='clustering.tsv')

Bases: object

Configuration constants for clustering operations.

CLUSTERING_OUTPUT: str = 'clustering.tsv'

CLUSTER_COLUMN_NAMES: List[str]

DEFAULT_COVERAGE: float = 0.8

DEFAULT_COV_MODE: int = 0

DEFAULT_EVAL: float = 0.001

DEFAULT_IDENTITY: float = 0.5

DEFAULT_MMSEQS2_OPTIONS: Dict[str, str | int | float]

DEFAULT_THREADS: int = 1