MMSeqsConfig

class panorama.alignment.utils.MMSeqsConfig(DEFAULT_DB_TYPE=0, PROTEIN_FAMILIES_FILENAME='all_protein_families.faa.gz', FAMILY_FILTER_ALL='all')

Bases: object

Configuration constants for MMseqs2 operations.

DEFAULT_DB_TYPE: int = 0

FAMILY_FILTER_ALL: str = 'all'

PROTEIN_FAMILIES_FILENAME: str = 'all_protein_families.faa.gz'