Systems analysis output ๐# System Projection on Genomes Projection Workflow Projection command Line Usage Advanced Options Projection command Line Arguments Projection Output Files 1. Pangenome Systems Summary (systems.tsv) 2. Organism Projection Files (projection/<organism>.tsv) System Association with Pangenome Elements Association Workflow Association Command Line Usage Association command line arguments Association Output Files Data Interpretation Technical Details System Partition Analysis Partition Workflow Partition Command Line Usage Partition command Line Arguments Partition Categories Partition Output Files Technical Details